Trent University Graduate Thesis Collection

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    Copyright for all items in the Trent University Graduate Thesis Collection is held by the author, with all rights reserved, unless otherwise noted.
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    Insights from Dictyostelium: Examining the role of cellular stress in Batten disease

    Year: 2024, 2024
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Thanabalasingam, Aruban, Thesis advisor (ths): Huber, Robert J, Degree committee member (dgc): Yee, Janet, Degree committee member (dgc): Donaldson, Micheal, Degree granting institution (dgg): Trent University
    Abstract: <p>The neuronal ceroid lipofuscinoses (NCLs), commonly known as Batten disease, are a family of fatal neurodegenerative disorders that primarily affect children. Several subtypes of NCLs have been reported, each being caused by a mutation in a distinct ceroid lipofuscinosis neuronal (CLN) gene; this results in aberrant lysosome function and the accumulation of lipoprotein aggregates (known… more

    The effect of cytokinins on the metabolite secretome of Giardia intestinalis during trophozoite growth, nutrient deprivation, and encystation

    Year: 2024, 2024
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Vedanti, Ghatwala Vijaykumar, Thesis advisor (ths): Emery, Neil RJ, Thesis advisor (ths): Yee, Janet, Degree committee member (dgc): Kisiala, Anna B, Degree granting institution (dgg): Trent University
    Abstract: <p>Giardia intestinalis is the causative agent of a diarrheal disease in mammals, but the mechanisms of disease pathogenesis are unclear. While proteins secreted by Giardia affect the host cells, the potential of hormone secretion has not been investigated to date. Cytokinins (CKs) are classified as phytohormones, but little is known about their role beyond plants. Mass spectrometry-based… more

    Interactome study of the Giardia intestinalis nuclear localized cytochrome b5

    Year: 2022, 2022
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Batoff, Gordon William, Thesis advisor (ths): Yee, Janet, Degree committee member (dgc): Huber, Robert J, Degree committee member (dgc): Saville, Barry, Degree granting institution (dgg): Trent University
    Abstract: <p>Giardia intestinalis is a waterborne enteric parasite that lacks mitochondria and the capacity for heme biosynthesis. Despite this, Giardia encodes several heme proteins, including four cytochrome b5 isotypes (gCYTB5-I – IV) of unknown function. The aim of this thesis is to gain insight into the function of the Giardia cytochrome b5 isotype III (gCYTB5-III) that is found in the nucleus,… more

    Using Fluorescent Carbon Dots for Biosensing Applications of Amino Acids

    Year: 2022, 2022
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Camilus, Nayomi Shalika, Thesis advisor (ths): Martic, Sanela, Degree committee member (dgc): Vreugdenhil, Andrew, Degree committee member (dgc): Yee, Janet, Degree granting institution (dgg): Trent University
    Abstract: <p>Amino acids make up proteins, which are the building blocks of life. A balance of amino acids is needed to maintain a healthy state. Tyrosine (Tyr) is synthesized from the metabolism of phenylalanine, which is an essential amino acid, meaning it can only be obtained from the diet. It is related to many metabolic and neurodegenerative diseases. Tyr can undergo post-translational… more

    Differential expression of cytochrome b5s in Giardia intestinalis during nitrosative stress and encystation

    Year: 2020, 2020
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Mowat, Kaitlyn, Thesis advisor (ths): Yee, Janet, Degree committee member (dgc): Huber, Robert, Degree committee member (dgc): Saville, Barry, Degree granting institution (dgg): Trent University
    Abstract: <p>The waterborne protozoan Giardia intestinalis cycles between the environmentally-resistant and infectious cyst and the metabolically-active trophozoite that adheres to the epithelial lining of the small intestine. Adhesion can trigger the innate immune response in epithelial cells, including the synthesis of the free radical nitric oxide (NO) that inhibits cell proliferation and… more

    The Effect of Nitrosative Stress on Heme Protein Expression and Localization in Giardia Intestinalis

    Year: 2019, 2019
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Sajer, Bayan, Thesis advisor (ths): Yee, Janet, Degree committee member (dgc): Rafferty, Steven, Degree committee member (dgc): Bates, Holly, Degree committee member (dgc): Brunetti, Craig, Degree granting institution (dgg): Trent University
    Abstract: <p>The parasitic protist Giardia intestinalis has five heme proteins: a flavohemoglobin and several isotypes of cytochrome b5. While the flavohemoglobin has a role in counteracting nitric oxide, the functions of the cytochromes (gCYTb5s) are unknown. In this study, the protein level and cellular localization of three gCYTB5 isotypes (gCYTb5-I, II and III) and flavohemoglobin were examined… more

    Functional Investigation of A Ustilago maydis Xylose Metabolism Gene and its Antisense Transcripts

    Year: 2018, 2018
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Goulet, Kristi Marie, Thesis advisor (ths): Saville, Barry J, Degree committee member (dgc): Yee, Janet, Degree committee member (dgc): Brunetti, Craig, Degree granting institution (dgg): Trent University
    Abstract: <p>Ustilago maydis is a biotrophic fungal plant pathogen that causes 'common smut of corn' disease. During infection, U. maydis develops a metabolic dependency on its host, relying on uptake of the carbon molecules provided within Zea mays tissues. The research presented indicated a requirement for metabolism of the pentose sugar D-xylose through functional investigation of a U.… more

    The Regulation of Cytokinins During Kernel Development in High and Low Yielding Oat and Barley Lines

    Year: 2017, 2017
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Paleczny, Andrea Rose, Thesis advisor (ths): Emery, Neil, Degree committee member (dgc): Yee, Janet, Degree committee member (dgc): Saville, Barry, Degree committee member (dgc): Olechowski, Henry, Degree granting institution (dgg): Trent University
    Abstract: <p>Cytokinins (CKs) are a family of plant phytohormones responsible for many areas of plant growth and development. There are four free base types of CKs found in higher plants, trans-zeatin (tZ), N6-(∆2-isopentenyl)adenine (iP), cis-Zeatin (cZ) and dihydrozeatin (DZ). CK biosynthesis is regulated by adenosine phosphate-isopentenyltransferase (IPT), which is encoded by a multi-gene family… more

    NMR and EPR Studies on Cytochrome b5 Isotypes of Giardia intestinalis

    Year: 2017, 2017
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Mesbahuddin, Mirfath Sultana, Thesis advisor (ths): Rafferty, Steven P, Degree committee member (dgc): Stock, Naomi L, Degree committee member (dgc): Yee, Janet, Degree granting institution (dgg): Trent University
    Abstract: <p>The amitochondrial protozoan, Giardia intestinalis, encodes four members of the cytochrome b5 (CYTB5) family of heme proteins of unknown function. While homology models can predict the likely fold of these proteins, supporting experimental evidence is lacking. The small size of the cytochromes (~16 kDa) makes them attractive targets for structural analysis by Electron Paramagnetic… more

    Flavohemoglobin expression in Giardia intestinalis exposed to nitrosative stress

    Year: 2017, 2017
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Teghtmeyer, Megan R, Thesis advisor (ths): Rafferty, Steven, Degree committee member (dgc): Brunetti, Craig, Degree committee member (dgc): Yee, Janet, Degree granting institution (dgg): Trent University
    Abstract: <p>The parasitic protist Giardia intestinalis lacks most heme proteins yet encodes a flavohemoglobin (gFlHb) that converts nitric oxide to nitrate and likely protects the cell from nitrosative stress. In this work an antibody raised against gFlHb was used to examine both changes in gFlHb expression levels and intracellular localization in Giardia in response to nitrosative stress. Giardia… more

    Studies of the Giardia intestinalis trophozoite cell cycle

    Year: 2017, 2017
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Horlock-Roberts, Kathleen, Thesis advisor (ths): Yee, Janet, Degree committee member (dgc): Brunetti, Craig, Degree committee member (dgc): Saville, Barry, Degree granting institution (dgg): Trent University
    Abstract: <p>To study the Giardia intestinalis cell cycle, counterflow centrifugal elutriation (CCE) was used to separate an asynchronous trophozoite culture into fractions enriched for cells at the different stages of the cell cycle. For my first objective, I characterized the appearance of a third peak (Peak iii) in our flow cytometry analysis of the CCE fractions that initially suggested the… more

    Interactome Study of Giardia Intestinalis Cytochromes B5

    Year: 2017, 2017
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Dayer, Guillem Sébastien, Thesis advisor (ths): Yee, Janet, Thesis advisor (ths): Rafferty, Steven, Degree committee member (dgc): Brunetti, Craig, Degree committee member (dgc): Saville, Barry, Degree granting institution (dgg): Trent University
    Abstract: <p>Giardia intestinalis is an anaerobic protozoan that lacks common eukaryotic heme-dependent respiratory complexes and does not encode any proteins involved in heme biosynthesis. Nevertheless, the parasite encodes several hemeproteins, including three members of the Type II cytochrome b5 sub-group of electron transport proteins found in anaerobic protist and amitochondriate organisms.… more

    Mutation of the B10 Tyrosine and E11 Leucine in Giardia intestinalis Flavohemoglobin

    Year: 2016, 2016
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Lukaszewicz, Brian, Thesis advisor (ths): Rafferty, Steven P, Degree committee member (dgc): Saville, Barry J, Degree committee member (dgc): Yee, Janet, Degree granting institution (dgg): Trent University
    Abstract: <p>The flavohemoglobin in Giardia intestinalis (gFlHb) is the only known protozoan member of a protein class typically associated with detoxifying nitric oxide (by oxidation to nitrate) in bacteria and yeast. Mutants of the B10 tyrosine (Y30F) and E11 leucine (L58A), conserved residues thought to influence ligand binding, were expressed and studied using Resonance Raman (RR) spectroscopy.… more

    Characterisation of the Giardia Tata-Binding Protein - Preparation for an in vivo approach

    Year: 2016, 2016
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Kemp, Adam, Thesis advisor (ths): Yee, Janet, Degree committee member (dgc): Saville, Barry J, Degree committee member (dgc): Brunetti, Craig R, Degree granting institution (dgg): Trent University
    Abstract: <p>The aim of this work was to identify the DNA sequences recognized by the Giardia TBP (gTBP) in vivo by using a chromatin immunoprecipitation assay (ChIP). Since a specific antibody for the protein of interest is required for this assay, a company was contracted to produce and purify a custom polyclonal antibody from the immunization of rabbits. Recombinant GST-gTBP was produced at a… more

    Expression and characterization of cytochrome b5 from Giardia lamblia

    Year: 2015, 2015
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Alam, Samiah Ashraf, Thesis advisor (ths): Rafferty, Steven P, Degree committee member (dgc): Yee, Janet, Degree committee member (dgc): Stock, Naomi, Degree granting institution (dgg): Trent University
    Abstract: <p>Giardia lamblia is an intestinal parasite found globally in freshwater systems that is responsible for endemic outbreaks of infectious diarrhea. As a unicellular parasite that lacks mitochondria, a respiratory chain and lives in the anaerobic environment of its host's intestine, Giardia was assumed for decades to lack heme proteins. However, its genome encodes several putative heme… more

    Genome annotation, gene characterization, and the functional analysis of natural antisense transcripts in the fungal plant pathogen Ustilago maydis

    Year: 2014, 2014
    Member of: Trent University Graduate Thesis Collection
    Name(s): Creator (cre): Donaldson, Michael Edward, Thesis advisor (ths): Saville, Barry J, Degree committee member (dgc): Brunetti, Craig R, Degree committee member (dgc): Yee, Janet, Degree granting institution (dgg): Trent University
    Abstract: <p><italic>Ustilago maydis</italic> (DC) Corda is the causal agent of 'common smut of corn'. Completion of the <italic>U. maydis</italic> lifecycle is dependent on development inside its host, <italic>Zea mays</italic>. Symptoms of <italic>U. maydis</italic> infection include chlorosis and the formation of tumours on all aerial corn… more