Environmental and Life Sciences

Phosphorus is the growth-limiting nutrient in freshwater environments. Dissolved organic phosphorus (DOP) refers to phosphorus within dissolved organic matter (DOM). Much of DOP is bioavailable, but it is poorly understood due to its complexity. This thesis explores the export DOP to Lake Erie from its tributaries, by investigating its speciation and concentration seasonally through weekly sampling of two tributaries and spatially across a river to lake transect. The rivermouth was a site of rapid transition, with lower concentrations of DOP in the lake than in the river and a greater proportion of P as DOP in the lake. Phosphomonoesters and aromatic DOM were coupled in the medium-sized Grand River, but not in the Upper Great Lakes-influenced Detroit River. Phosphodiesters and highly processed DOM were coupled in the Detroit River, but only during periods of low terrestrial inputs. Finally, we found that DOP is a large contributor to tributary phosphorus exports.

Author Keywords: dissolved organic matter, dissolved organic phosphorus, enzymatic hydrolysis, Lake Erie, nutrient export, rivermouth

Wetlands are highly susceptible to the invasion of invasive species. The invasive hybrid cattail (Typha × glauca) is prevalent in the southeastern Prairie Pothole Region (PPR) wetlands. However, concerns arise about its recent proliferation in the northwestern PPR without maternal T. angustifolia. To determine taxonomic distribution, I used species-specific PCR-RFLP and microsatellite markers for genotyping 245 samples from 50 northwest PPR sites. I found 75% T. latifolia, 7% T. angustifolia, 16% T. × glauca, and 2% backcrossed or advanced-generation hybrids. F1 T. × glauca has expanded in western PPR without its mother species, and the low occurrence of later-generation hybrids indicates their recent range expansion. Additionally, T. angustifolia offspring make fewer hybrids, which suggests that reproductive barriers may limit hybridization between parental species. This study highlights the vulnerability of prairies to cryptic invasions by Typha hybrids, and early detection of invasive species is a critical factor in wetland management success.

ABSTRACT

Development of Forest Degradation Indicators from Long-term Trajectories of Multispectral Satellite Images, and their Projections into the Future under Climate Change, in Ontario, Canada

Md. Mozammel Hoque

Ontario forests are affected by natural and anthropogenic disturbances leading to forest degradation, which significantly impact local ecosystems, health, safety, and economy. This thesis develops a methodology for the continuous assessment, mapping, and monitoring of present and historic (1972–2020) forest disturbances, and future forest degradation trends and projections, using remote sensing data, ground measurements, and predictive models in an Ontario forested area. After testing four supervised classification algorithms, support vector machine was found to be the most robust, consistent, and effective for land cover classification. Seven vegetation indices derived from Landsat and MODIS platforms were used to derive forest degradation indicators (FDIs), which were combined into one composite forest degradation indicator (CFDI) for each year, using the principal component analysis image fusion approach. The CFDI was the most informative indicator. The computed FDIs from available large multispectral image stacks were statistically related to historical climate variables. These relationships were used to project future FDIs related to climate variables derived from General Circulation Models through multiple linear regression models. Spatially-explicit maps of relevant climatic variables and of long-term historical forest degradation were developed from the LandTrendr trajectory analysis. Climate variables P, MA1, MA2, and CFDI were strongly correlated, allowing for the development of a model with a high coefficient of determination, R2 (0.93), and low RMSE (0.28) to predict future values. Forest disturbances (as CFDI) were also monitored from 1972–2020. Overall, these relationships allowed for to the creation of spatially-explicit, long-term historical forest degradation maps derived from the Landtrendr trajectory analysis. Historical and future forest degradation maps identified the areas with projected high vulnerability to climate change, as well as the actual and potential changes in forest cover under climate change. The results indicated 2050 will experience an average temperature increase of 3.0°C, projected yearly decrease in precipitation of 109.5 mm, evapotranspiration increase of 73.0 mm, and moisture deficits of 28.47 mm (MA1) and 37.60 mm (MA2), leading to increased forest degradation.

Author Keywords: Climate change impacts, Forest degradation indicators, Forest disturbance and degradation, Land cover classification, Projections of 2050 forest degradation under climate change, Remote sensing technology

Giardia intestinalis is a parasitic protozoan that possesses a flavohemoglobin (gFlHb), an enzyme that plays a role in the detoxification of reactive nitrogen species (RNS) and reactive oxygen species (ROS) via its nitric oxide dioxygenase (NOD) activity as well as its NADH-oxidase activity. This enzyme is a potential target for imidazole-based antigiardial drugs that act as ligands of the iron within its heme cofactor. In this work, two rapid and relatively inexpensive assays, the colorimetric Griess assay and a fluorescence assay, were adapted, optimized, and implemented to screen for flavohemoglobin inhibitors in parallel studies that compared the response of gFlHb to that of Hmp (Escherichia coli flavohemoglobin) when a group of six different imidazole-based compounds was tested. These assays displayed isotype selectivity, showing how the different drugs elicited different responses from the two enzymes. Comparative results for gFlHb and Hmp revealed that bulkier compounds elicited higher inhibition of Hmp, while smaller compounds resulted in better inhibition of gFlHb, which might be explained by the presence of different amino acid residues in the active sites of the enzymes, with two large amino acid sequence inserts being a unique feature of gFlHb, thus blocking the active site from being reached and blocked by larger compounds.

Author Keywords: 2.3-diaminonaphthalene, Flavohemoglobin, Giardia intestinalis, Griess Assay, imidazole-based drugs, nitric oxide detoxification

We studied the physiological and molecular responses of lab-grown Daphnia pulex to shifts in dietary (carbon, nitrogen, phosphorus, and cyanobacteria) and growth media (calcium) nutrient supply using a set of potential biomarkers via qPCR. Each examined nutrient had a strong effect on Daphnia mass-specific growth rate, and we found significant dose-dependent effects of treatment level (medium and low) on the gene expression of selected indicator genes. Furthermore, linear discriminant analysis models using different combinations of treatment levels could separate the animals between nutritional treatments with 86-100% prediction accuracy. This would suggest that Daphnia appear able to respond to nutrient limitation by adjusting their growth rate and associated molecular pathways to deal with an insufficient supply of nutrients. While this study provides valuable information regarding Daphnia's ability to adjust physiological and molecular processes under controlled laboratory conditions, more validation needs to be conducted before applying these potential biomarkers to wild populations to assess the type and intensity of nutritional stress.

Population cycles are characterized by predictable temporal oscillations in population size and are influenced by densities of both predators and prey. These oscillations are influenced by the predator functional response, i.e. the influence of prey density on predator kill rate. The Canada lynx (Lynx canadensis) is a predatory mammal with cyclic northern populations driven by snowshoe hare (Lepus americanus) density. Despite some understanding of the drivers of lynx cycles, we lack understanding of how lynx hunting behaviour, including kill site selection, is influenced by the spatio-temporal distribution of prey. These concepts are explored in chapter one of this thesis.

In chapter two, we (coauthors and I) built on work in Kluane region of the Yukon where lynx and hare populations have been tracked through several population cycles. Over six winters, we deployed GPS collars on >40 individual lynx, some of which were fitted with satellite transmitters, accelerometers, and audio recorders. We validated the use of these technologies for identifying hare kills with an accuracy of >87%. This validation is the foundation for chapter three of this dissertation.

In chapter three, we investigated the drivers of spatial variation in lynx kills. Using snow track transects through four winters of declining hare density, we developed a robust model of habitat-specific hare abundance over time. Using model predictions, in combination with lynx Utilization Distributions derived from GPS locations and related habitat associations, we determined the importance of hare abundance, lynx spatial use, and landscape characteristics such as vegetation density in determining patterns of lynx kills and space use. Lynx kill sites were most strongly predicted by lynx space use, followed by the relative abundance of hares, an index of tree cover density, and elevation. Lynx space use itself was not strongly predicted by hare relative abundance, but rather by a shift to the use of more open habitats when hares were abundant to higher use of denser habitats as hare populations declined; this apparently corresponded to temporal changes in hare distribution. This thesis helps to disentangle the drivers of spatio-temporal variation in predator foraging behaviour, with important implications for understanding predator-prey dynamics.

Author Keywords: animal behaviour, biologging, foraging, habitat selection, Lynx canadensis, predator-prey dynamics

Recovery of forest soils from chronic acidification can be enhanced with the use of non-industrial wood ash (NIWA). Non-industrial wood ash is alkaline and contains high concentrations of macronutrients, but trace metal concentrations must be evaluated to limit risk of metal toxicity following application. Additionally, understanding how different forest ecosystem components respond to NIWA is essential to inform current policy regulating its use as a soil amendment. This study evaluated the response of sugar maple (Acer saccharum) sap yield and chemistry, the response of soils beneath maple, American beech (Fagus grandifolia) and mixed species canopies, and maple and beech fine roots, foliage, seedling abundance, and understory vegetation abundance and composition to an application of 6 Mg ha-1 NIWA. Eight 40 x 40 m plots were established in a hardwood stand in Bracebridge, Ontario and were sampled prior-to and up to two years following application of NIWA (n = 4). Non-industrial wood ash significantly increased organic horizon soil pH and macronutrient (Ca, Mg, and K) concentrations with increases in Mg and K extending to the mineral soils. Significantly higher concentrations of some trace metals (Al, Fe, Mn, Cd, Cu, Pb, Zn) were also observed, but these were restricted to the organic horizons. Sugar maple sap, pH, and sweetness were unaffected by NIWA application, and while increases were observed in nutrient and metal concentrations in sap, the differences were small and variable between years, and all concentrations were consistent with those commonly found in maple sap. Fine root biomass of maple and beech trees was not affected by NIWA application, but higher concentrations of K and Mg were observed in the roots of both species, consistent with higher concentrations observed in the mineral soil horizons beneath both species' canopies. Only significant increases were observed in K in sugar maple foliage. Both critical foliar concentrations and diagnosis and recommendation integrated system (DRIS) norms for sugar maple did not indicate mineral nutrient deficiencies at this site; although this site was acidic and nutrient-poor, this may account for the lack of differences observed, particularly between species. Changes observed in understory vegetation were driven by years rather than between treatments. These results suggest that moderate doses of NIWA can provide significant decreases in soil acidity and increase nutrient availability, with limited increases in metal concentrations that are primarily restricted to the organic horizons.

Author Keywords: American beech, metal toxicity, Non-industrial wood ash (NIWA), sap sweetness, sap yield, sugar maple

Agricultural and urban land uses have been linked to the recent resurgence of eutrophication and salinization issues in the lower Great Lakes. This thesis examined the relationship between watershed land use and stream nitrate-nitrogen (NO3-N), total phosphorus (TP), and chloride (Cl) concentrations across southern Ontario. Using a self-organizing map analysis, the watersheds were classified into eight distinct spatial clusters, representing four agricultural, two urban, and two natural clusters. Agricultural clusters under intensive row crop agriculture exhibited NO3-N and TP concentrations up to twelve and five times higher, respectively, than the most natural-dominated cluster. Urban clusters had Cl concentrations up to nine times greater than the natural-dominated clusters. Three agricultural land use practices, namely continuous corn-soybean rotation, synthetic fertilizer application, and tile drainage, were positively correlated with stream NO3-N concentrations, whereas Cl concentrations increased with urban area and human population density. This thesis also characterized sampling trends of the provincial stream water quality monitoring program and found that sampling frequency has declined since the mid-1990s, while current sites are monitored almost exclusively during the ice-free period. Sampling year-round is critical to capture seasonal variations in NO3-N and Cl, while sampling across a full range of flow conditions is important for describing TP. Exclusion of sampling sites in close proximity of downstream municipal wastewater treatment plants and greenhouses can help isolate and better understand water quality impacts of non-point sources. Although intensive agricultural watersheds in southwestern Ontario draining into Lake Erie remain a priority for research and management, regions experiencing row crop expansion such as along the northern shore of Lake Ontario as well as rapidly urbanizing areas require further attention as these land use shifts will likely increase stream NO3-N and Cl concentrations, placing further pressure on water resources in the lower Great Lakes.

Author Keywords: Chloride, Nitrogen, Phosphorus, Self-organizing map, Southern Ontario, Water quality

Due to climate change and managed care, birds may face interacting effects of novel diets and environmental temperatures. I examined how captive zebra finches (Taeniopygia guttata) responded to a 6-month acclimation to either thermoneutral or cool temperatures when provided with saturated or unsaturated fatty acid enriched diets. Body mass was lower on the unsaturated fatty acid diet, but only in cool conditions. Individuals in cool temperatures and saturated fatty acid enriched diets had heavier organs, but pectoralis mass and metabolic rate did not display an effect of diet. While birds on each treatments illustrated similar initial increases in plasma fatty acid unsaturation, composition and concentration of constituent fatty acid varied based on their diet and temperature. Individuals on the unsaturated fatty acid enriched diet and cool treatments had lower survivorship. Collectively, my research will allow researchers to better predict how birds will be impacted by shifting or novel environments.

Author Keywords: chronic acclimation, fatty acids, metabolic rate, Taeniopygia guttata, temperature, unsaturation

Quantifying the impacts of environmental conditions on the abundance of wildlife populations is important for making informed management decisions in the face of increasing environmental threats. Managers require robust tools to estimate abundance and density of wildlife rapidly and with precision. Within the context of studying white-tailed deer, I evaluated the use of camera-traps and a recently developed spatial-mark resight model to estimate deer density and evaluate habitat and land use factors influencing deer density. The study was conducted in central Ontario, Canada on approximately 16 km2 of public land including the protected Peterborough Crown Game Preserve. Telemetry locations from 39 radio-collared deer were used and one hundred camera-traps were deployed for a total of 140 days from January 2022 to May 2022. Using telemetry locations and camera-trap photos I built a two-step spatial-mark resight model to estimate deer density. Deer density varied during the study as a portion of the population migrated to wintering areas outside of the study area. Despite fluctuations in precision, estimates improved towards the end of the study as more data became available and deer space use stabilized. The average deer density during the entire study was 3.0 deer/km2 (95% CI= 0.1, 5.8; SD= 1.7; CV= 55%; N= 238 deer). The lowest mean density was 0.2 deer/km2 (95% CI= 0.1, 0.4; SD= 0.1; CV= 50%; N= 15 deer) from February 26th to March 11th and the highest mean density was 4.8 deer/km2 (95% CI= 3.1, 6.2; SD= 0.8; CV= 17%; N= 378 deer) from May 7th to May 20th. When I incorporated spatial covariates into the model to estimate effects on deer density, higher proportions of mixed forest, deciduous forest, and road and trail density all had negative effects on deer density. While models contained some uncertainty, deer density appeared higher in the portion of the study area protected from licensed hunting. This thesis provides a framework for managers to use camera-traps and the spatial-mark resight model to monitor deer populations and link environmental covariates to spatial variation in density. As environmental threats such as habitat loss and infectious diseases increase in severity, monitoring wildlife population numbers will be vital for informed responses to these threats. The two-step spatial-mark resight model with environmental covariates provides managers with a long-term monitoring tool to evaluate management efforts and population health in forested areas.

Author Keywords: camera-trap, chronic wasting disease, landscape ecology, spatial-capture recapture, white-tailed deer, wildlife management